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Human disease related genes
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UMAP gene cluster
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Keyword
Chromosome
1
2
3
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5
6
7
8
9
10
11
12
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14
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MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
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Lymphoid tissue
Male glands
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Mouth
Skin
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Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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782 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
ABCA3
ENSSSCG00000008051
ENSG00000167972
ATP binding cassette subfamily A member 3
Tissue enhanced
Detected in all
lung:
28.6
ABR
ENSSSCG00000017804
ENSG00000159842
Active breakpoint cluster region-related protein
Low tissue specificity
Detected in all
ACOT7
ENSSSCG00000003377
ENSG00000097021
Acyl-CoA thioesterase 7
Tissue enhanced
Detected in many
brain:
39.2
testis:
31.3
ACTR3B
ENSSSCG00000016426
ENSG00000133627
ARP3 actin related protein 3 homolog B
Low tissue specificity
Detected in all
ADAM11
ENSSSCG00000017349
ENSG00000073670
ADAM metallopeptidase domain 11
Tissue enhanced
Detected in all
brain:
25.4
ADAMTS19
ENSSSCG00000014259
ENSG00000145808
ADAM metallopeptidase with thrombospondin type 1 motif 19
Tissue enhanced
Detected in many
adrenal gland:
31.3
cervix:
46.0
lens:
28.4
ADARB2
ENSSSCG00000011160
ENSG00000185736
Adenosine deaminase, RNA specific B2 (inactive)
Tissue enhanced
Detected in many
brain:
20.3
male glands:
16.5
ADGRB2
ENSSSCG00000003604
ENSG00000121753
Adhesion G protein-coupled receptor B2
Tissue enriched
Detected in many
brain:
31.1
ADORA2A
ENSSSCG00000010054
ENSG00000128271
Adenosine A2a receptor
Tissue enriched
Detected in many
brain:
67.0
AFF2
ENSSSCG00000012730
ENSG00000155966
AF4/FMR2 family member 2
Tissue enhanced
Detected in many
epididymis:
37.8
male glands:
53.3
AGAP2
ENSSSCG00000038732
ENSG00000135439
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
Tissue enriched
Detected in many
brain:
57.7
AJAP1
ENSSSCG00000031344
ENSG00000196581
Adherens junctions associated protein 1
Tissue enriched
Detected in some
brain:
19.8
AKAP5
ENSSSCG00000002268
ENSG00000179841
A-kinase anchoring protein 5
Tissue enriched
Detected in many
brain:
44.5
AMZ1
ENSSSCG00000007564
ENSG00000174945
Archaemetzincin-1
Tissue enhanced
Detected in many
brain:
15.0
ANKRD34A
ENSSSCG00000037823
ENSG00000272031
Ankyrin repeat domain 34A
Tissue enhanced
Detected in many
brain:
25.4
skeletal muscle:
9.5
ANKRD63
ENSSSCG00000035682
ENSG00000230778
Ankyrin repeat domain 63
Group enriched
Detected in some
brain:
31.8
lymphoid tissue:
9.4
ANO3
ENSSSCG00000013339
ENSG00000134343
Anoctamin 3
Group enriched
Detected in many
brain:
65.0
ovary:
30.2
AP1S1
ENSSSCG00000021145
ENSG00000106367
Adaptor related protein complex 1 sigma 1 subunit
Tissue enhanced
Detected in all
brain:
56.0
ARC
ENSSSCG00000038965
ENSG00000198576
Activity regulated cytoskeleton associated protein
Group enriched
Detected in some
brain:
37.5
synovial tissue:
64.2
AREL1
ENSSSCG00000002370
ENSG00000119682
Apoptosis resistant E3 ubiquitin protein ligase 1
Low tissue specificity
Detected in all
ARF3
ENSSSCG00000031381
ENSG00000134287
ADP-ribosylation factor 3
Tissue enhanced
Detected in all
brain:
89.9
ARFGEF3
ENSSSCG00000022968
ENSG00000112379
ARFGEF family member 3
Tissue enhanced
Detected in many
brain:
39.3
salivary gland:
39.4
upper respiratory system:
31.8
ARHGAP20
ENSSSCG00000015015
ENSG00000137727
Rho GTPase activating protein 20
Tissue enhanced
Detected in many
pineal gland:
41.4
testis:
31.7
ARHGAP32
ENSSSCG00000015238
ENSG00000134909
Rho GTPase activating protein 32
Tissue enhanced
Detected in all
brain:
44.2
ARHGAP33
ENSSSCG00000039135
ENSG00000004777
Rho GTPase activating protein 33
Group enriched
Detected in many
brain:
18.6
lymphoid tissue:
14.2
testis:
39.4
ARHGAP44
ENSSSCG00000018019
ENSG00000006740
Rho GTPase activating protein 44
Tissue enhanced
Detected in many
brain:
42.4
ARPP21
ENSSSCG00000011238
ENSG00000172995
CAMP regulated phosphoprotein 21
Group enriched
Detected in some
brain:
43.2
lymphoid tissue:
74.2
skeletal muscle:
35.5
ARX
ENSSSCG00000020801
ENSG00000004848
Aristaless related homeobox
Group enriched
Detected in some
brain:
19.5
ovary:
19.2
skeletal muscle:
16.1
ASPHD2
ENSSSCG00000009959
ENSG00000128203
Aspartate beta-hydroxylase domain containing 2
Tissue enhanced
Detected in many
brain:
22.6
stomach:
18.2
ATAT1
ENSSSCG00000024604
ENSG00000137343
Alpha-tubulin N-acetyltransferase 1
Low tissue specificity
Detected in all
ATG9B
ENSSSCG00000024431
ENSG00000181652
Autophagy-related protein 9B
Group enriched
Detected in some
mouth:
19.4
skin:
30.4
ATRNL1
ENSSSCG00000010654
ENSG00000107518
Attractin like 1
Tissue enhanced
Detected in all
brain:
45.9
ATXN7L3
ENSSSCG00000017362
ENSG00000087152
Ataxin 7 like 3
Low tissue specificity
Detected in all
B3GALT2
ENSSSCG00000010800
ENSG00000162630
Beta-1,3-galactosyltransferase 2
Tissue enhanced
Detected in many
heart:
47.6
large intestine:
24.5
male glands:
32.7
B3GAT2
ENSSSCG00000026246
ENSG00000112309
Beta-1,3-glucuronyltransferase 2
Tissue enhanced
Detected in many
brain:
13.5
retina:
11.3
BDNF
ENSSSCG00000013333
ENSG00000176697
Brain-derived neurotrophic factor
Tissue enhanced
Detected in many
brain:
18.1
pituitary gland:
7.9
BEND4
ENSSSCG00000008802
ENSG00000188848
BEN domain containing 4
Tissue enhanced
Detected in some
cartilage:
50.4
epididymis:
20.3
kidney:
12.3
male glands:
17.5
BHLHE22
ENSSSCG00000006222
ENSG00000180828
Basic helix-loop-helix family member e22
Tissue enhanced
Detected in many
brain:
36.6
BTBD9
ENSSSCG00000037507
ENSG00000183826
BTB/POZ domain-containing protein 9
Low tissue specificity
Detected in all
C11orf53
ENSSSCG00000015018
ENSG00000150750
Chromosome 11 open reading frame 53
Tissue enhanced
Detected in many
stomach:
10.8
upper respiratory system:
18.7
C11orf87
ENSSSCG00000036943
ENSG00000185742
Chromosome 11 open reading frame 87
Tissue enriched
Detected in some
brain:
39.4
C16orf70
ENSSSCG00000040749
ENSG00000125149
Chromosome 16 open reading frame 70
Low tissue specificity
Detected in all
C1QL3
ENSSSCG00000011043
ENSG00000165985
Complement C1q like 3
Tissue enriched
Detected in many
brain:
39.1
C1QTNF4
ENSSSCG00000013231
ENSG00000172247
C1q and TNF related 4
Group enriched
Detected in many
brain:
45.2
retina:
11.9
C2CD2L
ENSSSCG00000015111
ENSG00000172375
C2CD2 like
Low tissue specificity
Detected in all
C2orf69
ENSSSCG00000016086
ENSG00000178074
Chromosome 2 open reading frame 69
Low tissue specificity
Detected in all
C3orf80
ENSSSCG00000035935
ENSG00000180044
Chromosome 3 open reading frame 80
Tissue enhanced
Detected in many
adipose tissue:
12.4
brain:
8.5
stomach:
7.8
C5orf47
ENSSSCG00000035512
ENSG00000185056
Chromosome 5 open reading frame 47
Tissue enhanced
Detected in many
brain:
8.3
testis:
6.4
CA4
ENSSSCG00000023186
ENSG00000167434
Carbonic anhydrase 4 precursor
Tissue enriched
Detected in many
gallbladder:
83.4
CA7
ENSSSCG00000038785
ENSG00000168748
Carbonic anhydrase 7
Tissue enhanced
Detected in some
brain:
15.2
large intestine:
32.9
pineal gland:
8.1
salivary gland:
9.2
small intestine:
16.3
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